Events
Past Event
Biological Systems that Learn
NSF-Simons National Institute for Theory and Mathematics in Biology
9:00 AM
Details
Many biological systems have evolved to embody solutions to complex inverse problems to produce desired outputs or functions; others have evolved strategies to learn solutions to complex inverse problems on much shorter (e.g. physiological or developmental) time scales. Another class of systems that solves complex inverse problems for desired outputs is artificial neural networks. A critical distinction between the biological systems and neural networks is that the former are not associated with processors that carry out algorithms such as gradient descent to solve the inverse problems. They must solve them using local rules that only approximate gradient descent. Thus a key challenge is to understand how biological systems encode local rules for experience-dependent modification in physical hardware to implement robust solutions to complex
inverse problems. A similar challenge is faced by a growing community of researchers interested in developing physical systems that can solve inverse problems on their own. Despite the differences between physical/biological systems that solve inverse problems via local rules on one hand, and neural networks that solve them using global algorithms like gradient descent on the other hand, each has the potential to inform the other. For example, the insight that overparameterization is important for obtaining good solutions generalizes from neural networks to physical/biological learning systems.
Examples of biological systems that learn at different scales include (1) biological filament networks such as the actin cortex, collagen extracellular matrix and fibrin blood clots, which maintain rigidity homeostasis as an output under constantly varying and often extreme stresses as inputs. (2) Epithelial tissues during various stages of development, which can undergo large shape changes and controlled cellular flows as desired outputs. (3) Immune systems, which constantly adapt to bind to invading pathogens as desired outputs. (4) Ecological systems, in which species can change their interactions (eg. learn to consume new species) in order to bolster their population as an output.
The goal of this workshop is to discover new core principles and mathematical tools/approaches shared across physical learning systems, biological learning systems and neural networks that will inform deeper understanding and future discovery in all 3 fields. To this end, we will bring together researchers interested in viewing biological problems through the lens of inverse problems, researchers working on physical learning, and researchers studying neural networks for a week of intensive discussion and cross-fertilization.
We envision a unique format for this workshop, focused on framing and discussing open questions rather than on recitations of recent results. We will ask a subset of participants to present pedagogical overviews of key topics to help members of disparate communities establish common intellectual ground for discussion.
Time
Tuesday, January 7, 2025 at 9:00 AM - 5:00 PM
Contact
Calendar
NSF-Simons National Institute for Theory and Mathematics in Biology
Mathematical Modeling, Computational Methods, and Biological Fluid Dynamics: Research and Training
NSF-Simons National Institute for Theory and Mathematics in Biology
9:00 AM
//
Suite 3500
Details
Over billions of years, single-celled and simple multicellular organisms have evolved motility mechanisms particularly suited for locomotion in their fluid environment. In the past century, considerable progress has been made in understanding biological processes and fluid dynamics at various scales. In particular, locomotion strategies, from single cells to multicellular large animals in Newtonian and non-Newtonian fluids have motivated the development of new modeling frameworks and numerical methods while also leading to new bio-inspired designs for different applications. Specifically, advances in mathematical models and methods relating to fluid-structure interactions, including the method of regularized Stokeslets (MRS) and the immersed boundary (IB) method, are being highly leveraged to answer biological questions about animal interactions with their surrounding fluid.
This workshop will delve into the development and analysis of mathematical models, numerical methods, computational simulations, theoretical fluid dynamics, and the integration of biological experimental data into modeling, simulations, and data analysis. It will focus on recent and ongoing advancements in fluid-structure interactions, the development of computational libraries, and the incorporation of experimental data to improve biological predictions. Presentations and discussions will also address education, training, and topics related to encouraging participation in the mathematical sciences. A unique feature of the workshop is the inclusion of research findings in mathematical modeling within K–16 education. A special highlight of the event will be a tribute to Dr. Ricardo Cortez of Tulane University, recognizing his groundbreaking contributions to research, including the development of the Method of Regularized Stokeslets, as well as his outstanding service to the mathematics community.
The workshop will emphasize interdisciplinary research, demonstrating the critical role of mathematics and fluid dynamics in understanding biological phenomena. This will be showcased through invited talks, panel discussions, and poster presentations. Tutorials on the MRS and IB methods will provide hands-on demonstrations of how these tools and their variations can be applied to contemporary scientific challenges. Additionally, the workshop will encourage collaboration in research and training, with a particular focus on ensuring that everyone can thrive in the mathematical sciences. The workshop is also designed to promote the training and mentorship of students and early-career researchers. It will uniquely integrate research in mathematical modeling with education and facilitate discussions on promoting participation within the field.
Time
Monday, July 21, 2025 at 9:00 AM - 5:00 PM
Location
Suite 3500
Contact
Calendar
NSF-Simons National Institute for Theory and Mathematics in Biology
Mathematical Modeling, Computational Methods, and Biological Fluid Dynamics: Research and Training
NSF-Simons National Institute for Theory and Mathematics in Biology
9:00 AM
//
Suite 3500
Details
Over billions of years, single-celled and simple multicellular organisms have evolved motility mechanisms particularly suited for locomotion in their fluid environment. In the past century, considerable progress has been made in understanding biological processes and fluid dynamics at various scales. In particular, locomotion strategies, from single cells to multicellular large animals in Newtonian and non-Newtonian fluids have motivated the development of new modeling frameworks and numerical methods while also leading to new bio-inspired designs for different applications. Specifically, advances in mathematical models and methods relating to fluid-structure interactions, including the method of regularized Stokeslets (MRS) and the immersed boundary (IB) method, are being highly leveraged to answer biological questions about animal interactions with their surrounding fluid.
This workshop will delve into the development and analysis of mathematical models, numerical methods, computational simulations, theoretical fluid dynamics, and the integration of biological experimental data into modeling, simulations, and data analysis. It will focus on recent and ongoing advancements in fluid-structure interactions, the development of computational libraries, and the incorporation of experimental data to improve biological predictions. Presentations and discussions will also address education, training, and topics related to encouraging participation in the mathematical sciences. A unique feature of the workshop is the inclusion of research findings in mathematical modeling within K–16 education. A special highlight of the event will be a tribute to Dr. Ricardo Cortez of Tulane University, recognizing his groundbreaking contributions to research, including the development of the Method of Regularized Stokeslets, as well as his outstanding service to the mathematics community.
The workshop will emphasize interdisciplinary research, demonstrating the critical role of mathematics and fluid dynamics in understanding biological phenomena. This will be showcased through invited talks, panel discussions, and poster presentations. Tutorials on the MRS and IB methods will provide hands-on demonstrations of how these tools and their variations can be applied to contemporary scientific challenges. Additionally, the workshop will encourage collaboration in research and training, with a particular focus on ensuring that everyone can thrive in the mathematical sciences. The workshop is also designed to promote the training and mentorship of students and early-career researchers. It will uniquely integrate research in mathematical modeling with education and facilitate discussions on promoting participation within the field.
Time
Tuesday, July 22, 2025 at 9:00 AM - 5:00 PM
Location
Suite 3500
Contact
Calendar
NSF-Simons National Institute for Theory and Mathematics in Biology
Mathematical Modeling, Computational Methods, and Biological Fluid Dynamics: Research and Training
NSF-Simons National Institute for Theory and Mathematics in Biology
9:00 AM
//
Suite 3500
Details
Over billions of years, single-celled and simple multicellular organisms have evolved motility mechanisms particularly suited for locomotion in their fluid environment. In the past century, considerable progress has been made in understanding biological processes and fluid dynamics at various scales. In particular, locomotion strategies, from single cells to multicellular large animals in Newtonian and non-Newtonian fluids have motivated the development of new modeling frameworks and numerical methods while also leading to new bio-inspired designs for different applications. Specifically, advances in mathematical models and methods relating to fluid-structure interactions, including the method of regularized Stokeslets (MRS) and the immersed boundary (IB) method, are being highly leveraged to answer biological questions about animal interactions with their surrounding fluid.
This workshop will delve into the development and analysis of mathematical models, numerical methods, computational simulations, theoretical fluid dynamics, and the integration of biological experimental data into modeling, simulations, and data analysis. It will focus on recent and ongoing advancements in fluid-structure interactions, the development of computational libraries, and the incorporation of experimental data to improve biological predictions. Presentations and discussions will also address education, training, and topics related to encouraging participation in the mathematical sciences. A unique feature of the workshop is the inclusion of research findings in mathematical modeling within K–16 education. A special highlight of the event will be a tribute to Dr. Ricardo Cortez of Tulane University, recognizing his groundbreaking contributions to research, including the development of the Method of Regularized Stokeslets, as well as his outstanding service to the mathematics community.
The workshop will emphasize interdisciplinary research, demonstrating the critical role of mathematics and fluid dynamics in understanding biological phenomena. This will be showcased through invited talks, panel discussions, and poster presentations. Tutorials on the MRS and IB methods will provide hands-on demonstrations of how these tools and their variations can be applied to contemporary scientific challenges. Additionally, the workshop will encourage collaboration in research and training, with a particular focus on ensuring that everyone can thrive in the mathematical sciences. The workshop is also designed to promote the training and mentorship of students and early-career researchers. It will uniquely integrate research in mathematical modeling with education and facilitate discussions on promoting participation within the field.
Time
Wednesday, July 23, 2025 at 9:00 AM - 5:00 PM
Location
Suite 3500
Contact
Calendar
NSF-Simons National Institute for Theory and Mathematics in Biology
Discover, Discuss, Collaborate: An Informatics and Data Science Collaborative Event
I.AIM - Institute for Augmented Intelligence in Medicine
2:30 PM
//
Potocsnak FamilyAtrium, Simpson Querrey Biomedical Research Center
Details
You’re invited to join the newly formed NUCATS and I.AIM Informatics and Data Science Collaborative for an afternoon of discovery, discussion, and collaboration. Hear brief opening remarks that highlight exciting informatics and data science work at Northwestern, participate in interactive conversations, and check out posters from colleagues across campus. Snacks will be provided.
Poster session
Register your poster to be included in the poster session! Early-career researchers and students, as well as experienced investigators, are encouraged to showcase their posters at the event. Previously published posters are welcome.
The deadline to register an abstract is July 21.
Time
Wednesday, July 23, 2025 at 2:30 PM - 4:00 PM
Location
Potocsnak FamilyAtrium, Simpson Querrey Biomedical Research Center Map
Contact
Calendar
I.AIM - Institute for Augmented Intelligence in Medicine
Mathematical Modeling, Computational Methods, and Biological Fluid Dynamics: Research and Training
NSF-Simons National Institute for Theory and Mathematics in Biology
9:00 AM
//
Suite 3500
Details
Over billions of years, single-celled and simple multicellular organisms have evolved motility mechanisms particularly suited for locomotion in their fluid environment. In the past century, considerable progress has been made in understanding biological processes and fluid dynamics at various scales. In particular, locomotion strategies, from single cells to multicellular large animals in Newtonian and non-Newtonian fluids have motivated the development of new modeling frameworks and numerical methods while also leading to new bio-inspired designs for different applications. Specifically, advances in mathematical models and methods relating to fluid-structure interactions, including the method of regularized Stokeslets (MRS) and the immersed boundary (IB) method, are being highly leveraged to answer biological questions about animal interactions with their surrounding fluid.
This workshop will delve into the development and analysis of mathematical models, numerical methods, computational simulations, theoretical fluid dynamics, and the integration of biological experimental data into modeling, simulations, and data analysis. It will focus on recent and ongoing advancements in fluid-structure interactions, the development of computational libraries, and the incorporation of experimental data to improve biological predictions. Presentations and discussions will also address education, training, and topics related to encouraging participation in the mathematical sciences. A unique feature of the workshop is the inclusion of research findings in mathematical modeling within K–16 education. A special highlight of the event will be a tribute to Dr. Ricardo Cortez of Tulane University, recognizing his groundbreaking contributions to research, including the development of the Method of Regularized Stokeslets, as well as his outstanding service to the mathematics community.
The workshop will emphasize interdisciplinary research, demonstrating the critical role of mathematics and fluid dynamics in understanding biological phenomena. This will be showcased through invited talks, panel discussions, and poster presentations. Tutorials on the MRS and IB methods will provide hands-on demonstrations of how these tools and their variations can be applied to contemporary scientific challenges. Additionally, the workshop will encourage collaboration in research and training, with a particular focus on ensuring that everyone can thrive in the mathematical sciences. The workshop is also designed to promote the training and mentorship of students and early-career researchers. It will uniquely integrate research in mathematical modeling with education and facilitate discussions on promoting participation within the field.
Time
Thursday, July 24, 2025 at 9:00 AM - 5:00 PM
Location
Suite 3500
Contact
Calendar
NSF-Simons National Institute for Theory and Mathematics in Biology
Mathematical Modeling, Computational Methods, and Biological Fluid Dynamics: Research and Training
NSF-Simons National Institute for Theory and Mathematics in Biology
9:00 AM
//
Suite 3500
Details
Over billions of years, single-celled and simple multicellular organisms have evolved motility mechanisms particularly suited for locomotion in their fluid environment. In the past century, considerable progress has been made in understanding biological processes and fluid dynamics at various scales. In particular, locomotion strategies, from single cells to multicellular large animals in Newtonian and non-Newtonian fluids have motivated the development of new modeling frameworks and numerical methods while also leading to new bio-inspired designs for different applications. Specifically, advances in mathematical models and methods relating to fluid-structure interactions, including the method of regularized Stokeslets (MRS) and the immersed boundary (IB) method, are being highly leveraged to answer biological questions about animal interactions with their surrounding fluid.
This workshop will delve into the development and analysis of mathematical models, numerical methods, computational simulations, theoretical fluid dynamics, and the integration of biological experimental data into modeling, simulations, and data analysis. It will focus on recent and ongoing advancements in fluid-structure interactions, the development of computational libraries, and the incorporation of experimental data to improve biological predictions. Presentations and discussions will also address education, training, and topics related to encouraging participation in the mathematical sciences. A unique feature of the workshop is the inclusion of research findings in mathematical modeling within K–16 education. A special highlight of the event will be a tribute to Dr. Ricardo Cortez of Tulane University, recognizing his groundbreaking contributions to research, including the development of the Method of Regularized Stokeslets, as well as his outstanding service to the mathematics community.
The workshop will emphasize interdisciplinary research, demonstrating the critical role of mathematics and fluid dynamics in understanding biological phenomena. This will be showcased through invited talks, panel discussions, and poster presentations. Tutorials on the MRS and IB methods will provide hands-on demonstrations of how these tools and their variations can be applied to contemporary scientific challenges. Additionally, the workshop will encourage collaboration in research and training, with a particular focus on ensuring that everyone can thrive in the mathematical sciences. The workshop is also designed to promote the training and mentorship of students and early-career researchers. It will uniquely integrate research in mathematical modeling with education and facilitate discussions on promoting participation within the field.
Time
Friday, July 25, 2025 at 9:00 AM - 5:00 PM
Location
Suite 3500
Contact
Calendar
NSF-Simons National Institute for Theory and Mathematics in Biology
Open SkAI 2025
SkAI Institute
All Day
Details
The Open SkAI 2025 conference is the U.S. National Science Foundation and Simons Foundation-funded SkAI Institute's inaugural conference. The main aim of the conference is to enhance and generate new Astro-AI research directions. Conference themes will include: Astro-AI research across survey astronomy, from stars and transients to galaxy formation, evolution, and the dark sector. We encourage researchers from all levels to apply to attend.
Time
Tuesday, September 2, 2025
Contact
Calendar
SkAI Institute
AI for Researchers: Topic Modeling to Categorize Text Documents (In-person)
Northwestern IT Research Computing and Data Services
9:30 AM
//
Big Ten Room, Norris University Center
Details
Do you need to identify a set of themes from within a large collection of text documents? If so, topic modeling can help. For example, topic modeling can be used to identify recurring themes in news articles, discover research trends in scientific publications, or analyze public sentiment across social media posts. In this workshop, you will get a high-level overview of different existing techniques used for topic modeling which focuses on modern AI-driven approaches. You will also have ample time to work through step-by-step hands-on exercises to learn how to leverage AI-based topic modeling analysis techniques using real data through Python.
Prerequisites: Basic familiarity with Python.
Time
Tuesday, September 2, 2025 at 9:30 AM - 4:00 PM
Location
Big Ten Room, Norris University Center Map
Contact
Calendar
Northwestern IT Research Computing and Data Services
Open SkAI 2025
SkAI Institute
All Day
Details
The Open SkAI 2025 conference is the U.S. National Science Foundation and Simons Foundation-funded SkAI Institute's inaugural conference. The main aim of the conference is to enhance and generate new Astro-AI research directions. Conference themes will include: Astro-AI research across survey astronomy, from stars and transients to galaxy formation, evolution, and the dark sector. We encourage researchers from all levels to apply to attend.
Time
Wednesday, September 3, 2025
Contact
Calendar
SkAI Institute
AI for Researchers: Fine-Tuning LLMs for Text Classification (In-person)
Northwestern IT Research Computing and Data Services
9:30 AM
//
Big Ten Room, Norris University Center
Details
Do you have text data you need to classify? Are you lacking the time or money for research assistants to label a large number of examples to train a custom model? This workshop covers how to “fine-tune” an existing Large Language Model (LLM) to classify your own research text data. Fine-tuning helps you take advantage of a large model that other people with more resources and machine learning expertise already trained and use it for your project with relatively few labeled examples. That way you can accurately, reproducibly, and cost-effectively classify text data by topic, sentiment, or another concept.
Prerequisites: Basic familiarity with Python.
Time
Wednesday, September 3, 2025 at 9:30 AM - 4:00 PM
Location
Big Ten Room, Norris University Center Map
Contact
Calendar
Northwestern IT Research Computing and Data Services